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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71772760_71781471_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71772760 - 71781471
Intron Length:
8712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCTTC
5'SS Class:
major
3'SS Sequence:
GCTGTATTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CATGCTGTATTT
Flanking Amino Acid:
GVLSIAMNIKLVIMAGTVLL
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
71.1
35.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
77.5
0.62
0.9
73.4
41
Minor 5ss
43
-0.8
3
58.9
45.9
Minor BPS
43.3
-0.4
2.2
59.84
44.7

Associated Gene:

Gene:
PLPPR1
Ensembl Gene ID:
ENSAPLG00000006758
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043914
71738325 - 71781603
43279