Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7178440_7179291_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7178440 - 7179291

Intron Length:

852

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGATTG

5'SS Class:

strong_major

3'SS Sequence:

GAACACCCTGTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTTGAA

U12 Branch Point Sequence:

AGCTCATTAACA

Flanking Amino Acid:

TNFNKFERGQEDTFTIQAVD

Intron Amino Acid Position:

1412

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

74.2

37.1

Major BPS

0.55

1.1

63.4

44.3

Major PPT

57.1

0.16

0.9

48.3

35.8

Minor 5ss

47.6

-0.2

2.8

64.3

47.2

Minor BPS

66.9

0.53

1.6

72.09

39.4

Associated Gene:

Gene:

LOXHD1

Ensembl Gene ID:

ENSAPLG00000010718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026296

7098916 - 7229277

130362

ENSAPLT00000011160

7098916 - 7229277

130362