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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7190019_7192451_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7190019 - 7192451
Intron Length:
2433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
GAATCCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCATTTCGAATC
Flanking Amino Acid:
DADCVNIGLKILYEVTVVTG
Intron Amino Acid Position:
1610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
65.1
0.34
0.9
54.9
40.8
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
46.8
-0.2
1.7
55.94
36.7

Associated Gene:

Gene:
LOXHD1
Ensembl Gene ID:
ENSAPLG00000010718
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026296
7098916 - 7229277
130362