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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7197086_7205506_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7197086 - 7205506

Intron Length:

8421

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAATGTGC

5'SS Class:

major

3'SS Sequence:

TGGCTCTTCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTTAT

U12 Branch Point Sequence:

TTTTCCTTTATT

Flanking Amino Acid:

GTRPHWFLERIVMKNLTNQE

Intron Amino Acid Position:

1630

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.8

0.44

1.1

57.6

42.5

Major BPS

71.5

0.54

1.1

63.3

42.8

Major PPT

75.5

0.58

0.9

72.9

37.4

Minor 5ss

36.7

-1.5

3.2

41.6

45.2

Minor BPS

81.6

1.08

1.4

96.2

29.4

Associated Gene:

Gene:

LOXHD1

Ensembl Gene ID:

ENSAPLG00000010718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026296

7098916 - 7229277

130362

ENSAPLT00000011160

7098916 - 7229277

130362