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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7205685_7211429_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7205685 - 7211429

Intron Length:

5745

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTCCA

5'SS Class:

strong_major

3'SS Sequence:

CTCTGTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGACAAT

U12 Branch Point Sequence:

CAGCTCGTGACA

Flanking Amino Acid:

TIQVKTSDIGGAGTDANVFL

Intron Amino Acid Position:

1689

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.85

0.9

73.3

37.4

Major BPS

1.4

59.1

44.1

Major PPT

81.4

0.71

0.8

72.6

37.7

Minor 5ss

40.6

-1.1

2.7

45.4

Minor BPS

45.2

-0.3

51.64

40.4

Associated Gene:

Gene:

LOXHD1

Ensembl Gene ID:

ENSAPLG00000010718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026296

7098916 - 7229277

130362

ENSAPLT00000011160

7098916 - 7229277

130362