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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72132506_72136279_R

Intron Information:

Intron Rank:
132248
Intron Class:
major
Intron Phase:
Intron Coordinates:
72132506 - 72136279
Intron Length:
3774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
GTTTGCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
86.3
0.82
0.7
81.2
30.4
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
57.5
0.32
2.2
80.32
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018421
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036434
72132401 - 72137250
4850