Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72135018_72136279_R

Intron Information:

Intron Rank:

132250

Intron Class:

major

Intron Phase:

Intron Coordinates:

72135018 - 72136279

Intron Length:

1262

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCACA

5'SS Class:

strong_major

3'SS Sequence:

CTTTAACTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

TCCCCTTTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.85

0.9

76.7

33.9

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

80.9

0.69

0.9

74.1

35.2

Minor 5ss

34.2

-1.8

2.8

40.7

45.3

Minor BPS

0.83

1.2

80.9

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018421

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038185

72134964 - 72137251

2288