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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72136336_72136498_R

Intron Information:

Intron Rank:
132249
Intron Class:
major
Intron Phase:
Intron Coordinates:
72136336 - 72136498
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
TGTTTTCTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACGTGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
63.1
43.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81
0.7
0.8
76.8
32
Minor 5ss
33.8
-1.8
2.8
34.8
41.4
Minor BPS
53.6
0.1
2.2
74.47
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018421
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038185
72134964 - 72137251
2288
ENSAPLT00000036434
72132401 - 72137250
4850