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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72184063_72197645_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72184063 - 72197645
Intron Length:
13583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TGTTCCTAAAGC
Flanking Amino Acid:
DQILQLQHFKSKALREKWLL
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
88.9
0.88
0.6
84.3
23.7
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
62.3
0.37
2
75.04
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006575
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033913
72137272 - 72393622
256351
ENSAPLT00000030670
72137271 - 72394298
257028
ENSAPLT00000039415
72183619 - 72378390
194772
ENSAPLT00000026344
72137271 - 72394298
257028
ENSAPLT00000037632
72137271 - 72393622
256352
ENSAPLT00000036869
72137271 - 72393622
256352