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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72197777_72242428_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72197777 - 72242428
Intron Length:
44652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACA
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATGTCTTCCACA
Flanking Amino Acid:
KVKKLEENIHRLEQEIQKLE
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.3
39
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
75.1
0.57
0.9
69.2
36.4
Minor 5ss
31.2
-2.2
3.3
40.2
45.7
Minor BPS
50.1
-0
2
65.63
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006575
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033913
72137272 - 72393622
256351
ENSAPLT00000030670
72137271 - 72394298
257028
ENSAPLT00000039415
72183619 - 72378390
194772
ENSAPLT00000026344
72137271 - 72394298
257028
ENSAPLT00000037632
72137271 - 72393622
256352
ENSAPLT00000006814
72137272 - 72393622
256351
ENSAPLT00000036869
72137271 - 72393622
256352