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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72242544_72243120_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72242544 - 72243120
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTACA
5'SS Class:
major
3'SS Sequence:
TCTCTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCTCTCTTCACA
Flanking Amino Acid:
TEKSFDNLQKTFAHQDGDAV
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
75.2
34
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.2
0.77
0.7
79.2
26.3
Minor 5ss
42.2
-0.9
2.4
52.6
43.9
Minor BPS
61.5
0.36
1.8
72.02
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006575
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030670
72137271 - 72394298
257028
ENSAPLT00000039415
72183619 - 72378390
194772
ENSAPLT00000026344
72137271 - 72394298
257028
ENSAPLT00000037632
72137271 - 72393622
256352
ENSAPLT00000006814
72137272 - 72393622
256351
ENSAPLT00000036869
72137271 - 72393622
256352
ENSAPLT00000033913
72137272 - 72393622
256351