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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7226343_7228796_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7226343 - 7228796

Intron Length:

2454

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TTCCCTCCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAC

U12 Branch Point Sequence:

GCACCACTAACG

Flanking Amino Acid:

IIVTEMELCNKYFFRCNVKI

Intron Amino Acid Position:

1908

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

82.5

28.6

Major BPS

64.5

0.36

65.2

28.2

Major PPT

72.7

0.51

0.9

69.4

31.3

Minor 5ss

-1.2

3.3

52.8

38.5

Minor BPS

45.3

-0.5

49.09

43.5

Associated Gene:

Gene:

LOXHD1

Ensembl Gene ID:

ENSAPLG00000010718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026296

7098916 - 7229277

130362

ENSAPLT00000011160

7098916 - 7229277

130362