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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72287250_72375969_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72287250 - 72375969
Intron Length:
88720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATT
Flanking Amino Acid:
ESPEAEERAGKSSRNPEDDI
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.3
0.82
0.7
85.7
27.2
Minor 5ss
34.1
-1.8
2.9
36.5
40.5
Minor BPS
68.7
0.67
1.6
83.34
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006575
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006814
72137272 - 72393622
256351
ENSAPLT00000036869
72137271 - 72393622
256352
ENSAPLT00000033913
72137272 - 72393622
256351
ENSAPLT00000030670
72137271 - 72394298
257028
ENSAPLT00000039415
72183619 - 72378390
194772
ENSAPLT00000026344
72137271 - 72394298
257028
ENSAPLT00000037632
72137271 - 72393622
256352