About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72388288_72393529_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
72388288 - 72393529
Intron Length:
5242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTTTC
5'SS Class:
major
3'SS Sequence:
CTCCCCAAACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GAGTGAT
U12 Branch Point Sequence:
TCTCCCCAAACC
Flanking Amino Acid:
KLLSSKVTSEVLEATRVNRR
Intron Amino Acid Position:
1296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.3
35.6
Major BPS
55.7
0.14
1.4
49.1
46.3
Major PPT
59.9
0.22
1
52.2
35.7
Minor 5ss
43.8
-0.7
3
61.8
43
Minor BPS
52
0.04
2
68.8
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006575
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036869
72137271 - 72393622
256352
ENSAPLT00000030670
72137271 - 72394298
257028
ENSAPLT00000026344
72137271 - 72394298
257028
ENSAPLT00000037632
72137271 - 72393622
256352