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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72409815_72411691_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72409815 - 72411691
Intron Length:
1877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTCTCCCTGATG
Flanking Amino Acid:
LSKHVEGSSYGKVFVLLQLS
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
68
0.45
1
57.8
39
Major PPT
88.7
0.87
0.7
83.2
31.9
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
59.7
0.16
1.8
67.18
41

Associated Gene:

Gene:
SLC46A2
Ensembl Gene ID:
ENSAPLG00000006417
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020783
72404319 - 72411852
7534
ENSAPLT00000006645
72407498 - 72413376
5879