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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72577530_72578610_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72577530 - 72578610
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTCTATCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGGTTTCTATCT
Flanking Amino Acid:
MDVNVRGTYLTSKTCLPYLR
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.3
78.8
35.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
85.3
0.79
0.8
77.1
36.8
Minor 5ss
36.7
-1.5
3.3
49.9
39.7
Minor BPS
48.4
-0
1.9
68.59
42.6

Associated Gene:

Gene:
HSDL2
Ensembl Gene ID:
ENSAPLG00000005558
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005764
72574166 - 72586510
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