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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72578715_72579713_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72578715 - 72579713
Intron Length:
999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCCTTCTAAATA
Flanking Amino Acid:
MNPMWFKNHCAYTISKYGMS
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
68.4
36.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
80.7
0.69
0.8
76.5
32.1
Minor 5ss
27.7
-2.6
3
31.6
37.6
Minor BPS
59.1
0.28
1.7
65.77
41.9

Associated Gene:

Gene:
HSDL2
Ensembl Gene ID:
ENSAPLG00000005558
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005764
72574166 - 72586510
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