Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72585563_72585657_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

72585563 - 72585657

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGAAGG

5'SS Class:

strong_major

3'SS Sequence:

CCGTTGTGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

AGCCTGCTGACT

Flanking Amino Acid:

TQGVFQFELSGEEGGTWYID

Intron Amino Acid Position:

341

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.76

0.9

68.2

42.8

Major BPS

66.3

0.4

1.1

41.8

Major PPT

64.7

0.33

56.5

43.4

Minor 5ss

-1.9

2.9

37.5

41.1

Minor BPS

40.8

-0.6

2.2

55.89

40.1

Associated Gene:

Gene:

HSDL2

Ensembl Gene ID:

ENSAPLG00000005558

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005764

72574166 - 72586510

12345