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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72585787_72586266_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72585787 - 72586266
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GATTCTTTATCT
Flanking Amino Acid:
SSGDFVKMFTGKLKPTMAFM
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
82.9
0.74
0.7
81.5
29.8
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
69.3
0.69
1.6
81.99
39.3

Associated Gene:

Gene:
HSDL2
Ensembl Gene ID:
ENSAPLG00000005558
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005764
72574166 - 72586510
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