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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72654693_72655588_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72654693 - 72655588
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATATTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTACATATTT
Flanking Amino Acid:
NLLMLKGKSQAFLEMASEEA
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.4
0.68
0.9
74.8
39
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
49.6
0.05
2
75.01
41.5

Associated Gene:

Gene:
PTBP3
Ensembl Gene ID:
ENSAPLG00000005193
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005389
72622356 - 72676578
54223