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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72661743_72665845_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72661743 - 72665845
Intron Length:
4103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ACTATTTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TTGTCTCTAAAA
Flanking Amino Acid:
DPTNAYYAKMAMDGQNIYNA
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
73
0.57
1
73.6
28.6
Major PPT
79.5
0.66
0.9
72.9
36.8
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
60.3
0.32
1.8
73.3
38.4

Associated Gene:

Gene:
PTBP3
Ensembl Gene ID:
ENSAPLG00000005193
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005389
72622356 - 72676578
54223