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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72666021_72669245_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72666021 - 72669245
Intron Length:
3225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTATCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TCTGTTATAATT
Flanking Amino Acid:
VMDSAIPASFGSHGIVLPPY
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
74.7
0.56
0.9
66.8
39.6
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
53.3
0.18
1.7
71.4
40.7

Associated Gene:

Gene:
PTBP3
Ensembl Gene ID:
ENSAPLG00000005193
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005389
72622356 - 72676578
54223