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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72673124_72673750_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72673124 - 72673750
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TGGGTTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
ATTTTCTAGACA
Flanking Amino Acid:
ITPHGLFILFGVYGDVHRVK
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
71.2
0.48
1
64.8
41.4
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
64.6
0.45
1.7
75.95
35.1

Associated Gene:

Gene:
PTBP3
Ensembl Gene ID:
ENSAPLG00000005193
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005389
72622356 - 72676578
54223