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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72673844_72674420_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72673844 - 72674420
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACTCATT
5'SS Class:
major
3'SS Sequence:
TTTCACTGATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTGATT
Flanking Amino Acid:
QMADANQAQLAISNLNGQRL
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
74.8
41.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
67.1
0.38
1
67.3
38.7
Minor 5ss
44.3
-0.6
3.2
66.6
44.3
Minor BPS
59.9
0.39
1.9
85.4
34.5

Associated Gene:

Gene:
PTBP3
Ensembl Gene ID:
ENSAPLG00000005193
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005389
72622356 - 72676578
54223