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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72674638_72675697_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72674638 - 72675697
Intron Length:
1060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
GTTTTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAAAC
Flanking Amino Acid:
PSATLHLSNIPPSVSVDDLK
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.3
66.2
39.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.1
0.61
1
74.1
39.5
Minor 5ss
33.4
-1.9
2.7
42.8
36.9
Minor BPS
70.5
0.62
1.3
75.89
33.9

Associated Gene:

Gene:
PTBP3
Ensembl Gene ID:
ENSAPLG00000005193
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005389
72622356 - 72676578
54223