Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72693570_72694774_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

72693570 - 72694774

Intron Length:

1205

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCTAT

5'SS Class:

strong_major

3'SS Sequence:

AATCTGCTTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TGTGTTTTAAAT

Flanking Amino Acid:

FVGNGRTHCQDKDECQIGAN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

74.9

38.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

69.9

0.45

0.9

62.9

38.6

Minor 5ss

44.1

-0.6

3.2

63.6

48.1

Minor BPS

63.1

0.49

1.5

77.19

39.4

Associated Gene:

Gene:

SUSD1

Ensembl Gene ID:

ENSAPLG00000004979

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005156

72691627 - 72736805

45179