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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72694931_72695983_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72694931 - 72695983
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGACACA
5'SS Class:
major
3'SS Sequence:
TCTGAACTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TTTCTCTGAACT
Flanking Amino Acid:
FIPNDGTNCTDIDECEESGL
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
64.9
41.1
Major BPS
69.8
0.49
1
61
37.5
Major PPT
71
0.47
0.9
67
39.2
Minor 5ss
37.6
-1.4
3.2
49.3
46.7
Minor BPS
74.8
0.86
1.3
90.4
32.6

Associated Gene:

Gene:
SUSD1
Ensembl Gene ID:
ENSAPLG00000004979
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005156
72691627 - 72736805
45179