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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72699218_72701501_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72699218 - 72701501
Intron Length:
2284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTGTTATAATG
Flanking Amino Acid:
WWDGADLVCKEIDCGRPLLI
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
88.1
0.86
0.8
80.8
36.8
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
52.6
-0
1.7
63.07
39.8

Associated Gene:

Gene:
SUSD1
Ensembl Gene ID:
ENSAPLG00000004979
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005156
72691627 - 72736805
45179