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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72715008_72724206_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72715008 - 72724206
Intron Length:
9199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTACTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATTTGTTTACTT
Flanking Amino Acid:
LMVSMTTRITDPPFPDVEFV
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.3
40.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
80.4
0.68
0.8
77.9
36.2
Minor 5ss
35.5
-1.7
3.2
50.7
45.7
Minor BPS
55.6
0.25
2
77.48
40

Associated Gene:

Gene:
SUSD1
Ensembl Gene ID:
ENSAPLG00000004979
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005156
72691627 - 72736805
45179