Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72724301_72725376_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

72724301 - 72725376

Intron Length:

1076

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTCTA

5'SS Class:

major

3'SS Sequence:

TGTTTCACTCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAC

U12 Branch Point Sequence:

GTTTGTTTCACT

Flanking Amino Acid:

RKAEDRNGPISLYQVIVLPL

Intron Amino Acid Position:

578

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.8

0.61

1.2

71.8

39.4

Major BPS

72.3

0.55

1.2

77.4

37.4

Major PPT

0.58

0.9

67.9

38.8

Minor 5ss

40.2

-1.1

2.7

50.6

45.7

Minor BPS

56.3

0.28

2.2

80.14

42.2

Associated Gene:

Gene:

SUSD1

Ensembl Gene ID:

ENSAPLG00000004979

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005156

72691627 - 72736805

45179