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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72725633_72730937_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72725633 - 72730937
Intron Length:
5305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATGCTTTCATT
Flanking Amino Acid:
FLRIISEWNKVRTQSCAVWA
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
74.9
34.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
87.5
0.84
0.7
85
28.5
Minor 5ss
31
-2.2
3.6
46.5
48.8
Minor BPS
57.7
0.32
1.8
76.34
41.1

Associated Gene:

Gene:
SUSD1
Ensembl Gene ID:
ENSAPLG00000004979
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005156
72691627 - 72736805
45179