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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72733913_72736592_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72733913 - 72736592
Intron Length:
2680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTTTTTCTAACT
Flanking Amino Acid:
LILFLSFSAARSYLHSAVHS
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
78.6
37.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
89.6
0.89
0.6
88.3
21.5
Minor 5ss
38.7
-1.3
3
51.4
45.2
Minor BPS
67.4
0.62
1.6
84.98
35.2

Associated Gene:

Gene:
SUSD1
Ensembl Gene ID:
ENSAPLG00000004979
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005156
72691627 - 72736805
45179