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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72814979_72816359_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72814979 - 72816359
Intron Length:
1381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTATGTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATGT
Flanking Amino Acid:
FDYIQLRGVQGGALCFSKLD
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.2
0.61
0.9
68.6
41.9
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
59.7
0.38
1.9
78.93
43.7

Associated Gene:

Gene:
UGCG
Ensembl Gene ID:
ENSAPLG00000011958
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012447
72812551 - 72837075
24525