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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72820041_72820966_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72820041 - 72820966
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
CACTTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTGTGTACAC
Flanking Amino Acid:
YPNVDARLFIGGKKVGINPK
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
78.7
0.65
0.8
77.2
31.2
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
42.4
-0.5
2.5
62.66
43.3

Associated Gene:

Gene:
UGCG
Ensembl Gene ID:
ENSAPLG00000011958
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012447
72812551 - 72837075
24525