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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72821070_72824175_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72821070 - 72824175
Intron Length:
3106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTACTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAC
U12 Branch Point Sequence:
TTTTTTTTTACT
Flanking Amino Acid:
ETFFELDYPKYEVLLCVQDH
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
82.5
29.7
Major BPS
57.7
0.19
1.2
66.7
40
Major PPT
85.9
0.81
0.8
82.3
34.1
Minor 5ss
47.1
-0.3
2.5
59.7
39.1
Minor BPS
74
0.84
1.5
91.27
31.8

Associated Gene:

Gene:
UGCG
Ensembl Gene ID:
ENSAPLG00000011958
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012447
72812551 - 72837075
24525