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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72883146_72884614_F

Intron Information:

Intron Rank:
145285
Intron Class:
major
Intron Phase:
Intron Coordinates:
72883146 - 72884614
Intron Length:
1469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTCA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTCTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
64.3
36
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
87.4
0.84
0.6
84.3
23.8
Minor 5ss
42.5
-0.8
3.1
56.5
47.9
Minor BPS
70.6
0.64
1.7
82.43
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028330
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048039
72883068 - 72891883
8816