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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72884840_72889361_F

Intron Information:

Intron Rank:
145286
Intron Class:
major
Intron Phase:
Intron Coordinates:
72884840 - 72889361
Intron Length:
4522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTCCCTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.6
0.6
0.9
70.4
40.1
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
64.1
0.44
1.7
75.03
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028330
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048039
72883068 - 72891883
8816