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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72928926_72931428_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72928926 - 72931428
Intron Length:
2503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGATGATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
GTTTGATGATTT
Flanking Amino Acid:
EENDVDSPEKVQQPKEQHLP
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
69.1
0.43
1
66.8
43.9
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
43.7
-0.4
2.2
66.88
43.7

Associated Gene:

Gene:
SHOC1
Ensembl Gene ID:
ENSAPLG00000017936
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043452
72926363 - 72961043
34681