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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72934436_72935801_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

72934436 - 72935801

Intron Length:

1366

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTCTT

5'SS Class:

strong_major

3'SS Sequence:

TCTATTTGTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTTAT

U12 Branch Point Sequence:

ATGTCTTCTATT

Flanking Amino Acid:

EKVICDRFKEGKVDEKEIML

Intron Amino Acid Position:

293

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.8

83.5

35.1

Major BPS

72.5

0.56

1.2

63.4

Major PPT

68.9

0.43

1.1

70.3

39.2

Minor 5ss

46.2

-0.4

2.8

67.2

43.9

Minor BPS

49.9

0.08

1.8

70.01

41.8

Associated Gene:

Gene:

SHOC1

Ensembl Gene ID:

ENSAPLG00000017936

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043452

72926363 - 72961043

34681