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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72946435_72947887_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

72946435 - 72947887

Intron Length:

1453

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATAAT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCTGTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

AAGGCTTTAACT

Flanking Amino Acid:

ALVHTLSTVEGLKAIDLNYE

Intron Amino Acid Position:

416

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

89.4

23.3

Major BPS

79.2

0.73

75.3

39.4

Major PPT

84.3

0.77

0.8

80.4

31.6

Minor 5ss

36.8

-1.5

2.9

50.6

45.9

Minor BPS

67.8

0.64

1.4

75.21

41.7

Associated Gene:

Gene:

SHOC1

Ensembl Gene ID:

ENSAPLG00000017936

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043452

72926363 - 72961043

34681