Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72948632_72949163_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

72948632 - 72949163

Intron Length:

532

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGCACT

5'SS Class:

strong_major

3'SS Sequence:

TACACTGTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATGAA

U12 Branch Point Sequence:

TAGTTATGAAAC

Flanking Amino Acid:

KTTLPETRQMGNHCGSFLLE

Intron Amino Acid Position:

501

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

75.3

40.8

Major BPS

75.5

0.63

40.9

Major PPT

0.52

69.1

41.4

Minor 5ss

41.6

-0.9

2.9

45.2

Minor BPS

47.8

-0.1

1.8

58.97

39.2

Associated Gene:

Gene:

SHOC1

Ensembl Gene ID:

ENSAPLG00000017936

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043452

72926363 - 72961043

34681