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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72949270_72953213_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72949270 - 72953213
Intron Length:
3944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GCATATTAAATA
Flanking Amino Acid:
IPDFLQLLESKYSLRGDTLL
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
26.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
82.4
0.73
0.9
76
37.4
Minor 5ss
28.3
-2.5
3.1
31.2
36.7
Minor BPS
47
-0.2
1.8
53.35
39.4

Associated Gene:

Gene:
SHOC1
Ensembl Gene ID:
ENSAPLG00000017936
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043452
72926363 - 72961043
34681