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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72955968_72957021_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

72955968 - 72957021

Intron Length:

1054

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGTCAA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTGTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTGAA

U12 Branch Point Sequence:

ACTTGAATATCT

Flanking Amino Acid:

LPEVPKKVLKHFSDMTSLYS

Intron Amino Acid Position:

662

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

1.1

75.3

36.2

Major BPS

65.8

0.39

57.3

39.4

Major PPT

86.5

0.82

0.9

84.6

Minor 5ss

29.9

-2.3

2.6

32.9

41.9

Minor BPS

42.1

-0.5

2.3

64.42

45.5

Associated Gene:

Gene:

SHOC1

Ensembl Gene ID:

ENSAPLG00000017936

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043452

72926363 - 72961043

34681