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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72974555_72976386_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72974555 - 72976386
Intron Length:
1832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTAAATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATTCTTTAACT
Flanking Amino Acid:
VTVCAISVFQFFSWWSSYNE
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
74.8
0.56
1
66.8
42.8
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
89.6
1.32
0.8
97.26
26.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006443
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006675
72971300 - 72977806
6507