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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_72985807_72991047_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72985807 - 72991047
Intron Length:
5241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
TGGTTCTTAGAG
Flanking Amino Acid:
SSTQEGVRKKVMELLVHLNK
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
86
0.81
0.7
84.6
23.1
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
51.3
-0.1
1.8
57.07
44.2

Associated Gene:

Gene:
ECPAS
Ensembl Gene ID:
ENSAPLG00000006453
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006785
72978981 - 73036969
57989