About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73003881_73003990_F


Intron Information:

Intron Rank:
13

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
73003881 - 73003990

Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTGGGTGCT

5'SS Class:
strong_major

3'SS Sequence:
TTTTGTACAACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTTTAAA

U12 Branch Point Sequence:
TTTTGTACAACA

Flanking Amino Acid:
VQQFFEALCKEDADTRLAIQ

Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
82.3
0.76
0.9
74.9
35.3

Major BPS
78
0.7
0.9
79.6
29.1

Major PPT
75.7
0.58
1
71.2
38.4

Minor 5ss
28.5
-2.5
3.4
40.8
45.6

Minor BPS
49.2
-0
2.2
72.45
39.6

Associated Gene:

Gene:
ECPAS

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

72992891 - 73036416
43526

72992891 - 73036969
44079

72978981 - 73036969
57989