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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73008788_73009533_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73008788 - 73009533
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTCACAAGAATC
Flanking Amino Acid:
LPFNPATFGEIVLYLRMCLA
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
81.6
30.3
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
81.3
0.7
0.7
80.6
24.6
Minor 5ss
37.3
-1.4
3.3
52.6
44.6
Minor BPS
44.7
-0.4
1.9
58.51
40

Associated Gene:

Gene:
ECPAS
Ensembl Gene ID:
ENSAPLG00000006453
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029515
72992891 - 73036416
43526
ENSAPLT00000023146
72992891 - 73036969
44079
ENSAPLT00000006785
72978981 - 73036969
57989