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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73012322_73013668_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73012322 - 73013668
Intron Length:
1347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAACTACC
5'SS Class:
major
3'SS Sequence:
TTGTTGTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
ATTTTCTGCATT
Flanking Amino Acid:
QLIKMTKDNHSPEVQHGSLL
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.2
71.8
38.2
Major BPS
74.8
0.62
1
67
39.8
Major PPT
78.5
0.64
0.9
73.9
36.8
Minor 5ss
45
-0.5
2.6
60.4
36.9
Minor BPS
55.8
0.26
1.9
78.66
37.9

Associated Gene:

Gene:
ECPAS
Ensembl Gene ID:
ENSAPLG00000006453
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023146
72992891 - 73036969
44079
ENSAPLT00000006785
72978981 - 73036969
57989
ENSAPLT00000029515
72992891 - 73036416
43526