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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73023496_73024255_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73023496 - 73024255
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGCTA
5'SS Class:
major
3'SS Sequence:
TCCTTGTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TCGAAATGAAAT
Flanking Amino Acid:
TSSLWRIRESSCLALNDLLR
Intron Amino Acid Position:
1184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
64.2
41.4
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
84.7
0.78
0.8
79.6
32.4
Minor 5ss
40.5
-1.1
3.3
56.2
48
Minor BPS
42.5
-0.4
1.9
57.58
44.1

Associated Gene:

Gene:
ECPAS
Ensembl Gene ID:
ENSAPLG00000006453
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029515
72992891 - 73036416
43526
ENSAPLT00000023146
72992891 - 73036969
44079
ENSAPLT00000006785
72978981 - 73036969
57989