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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_73024362_73025440_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73024362 - 73025440
Intron Length:
1079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTTAAAAATA
Flanking Amino Acid:
ILFRVQDDIKESVRKAAELA
Intron Amino Acid Position:
1220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.7
0.82
0.7
85.4
29.4
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
45.1
-0.3
2.1
61.76
38.4

Associated Gene:

Gene:
ECPAS
Ensembl Gene ID:
ENSAPLG00000006453
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023146
72992891 - 73036969
44079
ENSAPLT00000006785
72978981 - 73036969
57989
ENSAPLT00000029515
72992891 - 73036416
43526